The old IP Chars get wiped in the process of reading the new ones. There are no learned characteristics on an Altie CVT, I wish there were. If they would simply make the stupid TCM's "learn" to tighten the belt a hair when judder is detected, we'd all be better off. The only learned characteristics on any of them are for the 2-speed Sentra/Versa CVT's, and it only applies to the planetary high-low clutch. None of them have any learned traits for the belt. The ECM's do have learned memory, but that doesn't apply here.
If you want the memory for judder DTC's and CVT-A/CVT-B cleared out, that requires reprogramming the TCM firmware. I think yours is too old to have judder detection, but basically all those things disappear when you update the operating program, whether that's an actual update or simply a rewrite of what's already there. The repro isn't a big deal if you want it done, usually 20~30 minutes' work (including setting up the hideously slow C3+).